Peer-reviewed articles and pre-prints

• Martin M. A., Brizzi A., Xi X. et al. (2025).
  Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data. PLoS pathogens.
  doi.org/10.1371/journal.ppat.1013065.
• Blenkinsop A., Sofocleous L., di Lauro F. et al. (2025). Bayesian viral phylogenetic source attribution from consensus sequences and time since infection estimates. Statistical Methods in Medical Research. doi.org/10.1177/09622802241309750.
• Villaveces A., Chen Y., Tucker S., Blenkinsop A. et al. (2025). Orphanhood and caregiver death among children in the United States by all-cause mortality, 2000–2021. Nature Medicine. doi.org/10.1038/s41591-024-03343-6.
• Blenkinsop A., Pantazis N., Kostaki E. et al. (2024). Sources of HIV infections among MSM with a migration background: a viral phylogenetic case study in Amsterdam, the Netherlands. Journal of Infectious Diseases. DOI:10.1093/infdis/jiae267.
• Choodari-Oskooei B.†, Blenkinsop A.†, Handley K., Pinkney T., Parmar M. K. B. (2024). Multi-arm multi-stage (MAMS) randomised selection designs: impact of treatment selection rules on the operating characteristics. BMC Medical Research Methodology. DOI:10.1186/s12874-024-02247-w.
• Monod M., Brizzi A., Galiwango R. et al. (2023). Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda. Nature Microbiology. DOI:10.1038/s41564-023-01530-8.
• Flaxman S., Kasonka L., Cluver L. et al. (2023). List child dependents on death certificates. Science. DOI:10.1126/science.adh878.
• Flaxman S., Whittaker C., Semenova E. et al. (2023). Assessment of COVID-19 as the Underlying Cause of Death Among Children and Young People Aged 0 to 19 Years in the US. JAMA Network Open. DOI:10.1001/jamanetworkopen.2022.53590.
• Monod M., Blenkinsop A., Brizzi A. et al. (2023). Regularised B-splines Projected Gaussian Process Priors to Estimate Time-trends in Age-specific COVID-19 Deaths. Bayesian Analysis. DOI:10.1214/22-BA1334.
• Blenkinsop A., Monod M., van Sighem A. et al. (2022). Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam. eLife. DOI:10.7554/eLife.76487.
• Brizzi A., Whittaker C., Servo L. et al. (2022). Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals. Nature Medicine. DOI:10.1038/s41591-022-01807-1.
• Unwin H. J., Hillis S., Cluver L. et al. (2022). Global, regional, and national minimum estimates of children affected by COVID-19-associated orphanhood and caregiver death, by age and family circumstance up to Oct 31, 2021: an updated modelling study. Lancet Child and Adolescent Health, 6(4). DOI:10.1016/S2352-4642(22)00005-0.
• Hillis S. D.‡ , Blenkinsop A.‡ , Villaveces A. et al. (2021). COVID-19-Associated Orphanhood and Caregiver Death in the United States. Pediatrics, 148(6): e2021053760. DOI:10.1542/peds.2021-053760.
• Bezemer D.†, Blenkinsop A.†, Hall M. et al. (2021). Many but small HIV-1 non-B transmission chains in the Netherlands. AIDS, 36(1): 83-94. DOI:10.1097/QAD.0000000000003074.
• Monod M.†, Blenkinsop A.†, Xi X.† et al. (2021). Age groups that sustain resurging COVID-19 epidemics in the United States. Science, 371(6536): eabe8372. DOI:10.1126/science.abe8372.
• Blenkinsop A., van der Flier W. M., Wolk D. et al. (2020). Nonmemory cognitive symptom development in Alzheimer’s disease. European Journal of Neurology, 27: 995-1002. DOI:10.1111/ene.14185.
• Blenkinsop A., Choodari-Oskooei B. (2019). Multi-arm, multi-stage randomized controlled trials with stopping boundaries for efficacy and lack-of-benefit: An update to nstage. Stata Journal, 19(4):782-802. DOI:10.1177/1536867X19893.
• Blenkinsop A., Choodari-Oskooei B. (2019). Assessing the impact of efficacy stopping rules on the error rates under the multi-arm multi-stage framework. Clinical Trials, 16(2):132-141. DOI:10.1177/1740774518823551.

† Contributed equally ‡ Joint first author